SeqMonk is a program which can analyse large data sets of mapped genomic positions. It is most commonly used to work with data coming from high-throughput sequencing pipelines.
The program allows you to view your reads against an annotated genome and to quantitate and filter your data to let you identify regions of interest. It is a friendly way to explore and analyse very large datasets.
This course provides an introduction to the main features of SeqMonk and will run through the analysis of a couple of different datasets to show what sort of analysis options it provides.
Number of course hours : 5
Level: Beginners
Topics Covered:
Course content
- What is SeqMonk
- Installing and configuring the program
- Creating a project and importing data
- Using the chromosome viewer
- Quantitating and Filtering Data
- Creating Reports
- Exporting text and graphics