RESOURCES AND TRAININGS ONLINE

Internal Training Pyramid In this collection of online resources you will find internal and external courses, and educational material for self-paced study. The courses are organized in four different categories:

  • Research & technology,
  • Open science & Responsible Research Innovation
  • Knowledge transfer
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Everybody is encouraged to upload a course that might be of interest to the broader scientific community by sending an email to training@crg.eu or via this link HERE .




Phylogenetics of animal pathogens: basic principles and applications

Description of the e-learning course

Background

The vast diversity of the pathogens affecting livestock demands a very specific diagnostic procedure in identification and characterization of each pathogen. In this context, the enormous amount of sequence and genotype data is being generated on animal pathogens, which is further useful in understanding their pathogenicity and molecular epidemiology. The usage of this data in developing efficient molecular diagnostic tools needs basic understanding of the phylogenetic analysis. Phylogenetic classification, construction of trees, interpretation unveils the geographical distribution and migration of pathogens which helps in better management of animal diseases.

The present course is designed with introduction to phylogenetics, tools, building and interpreting trees and finally its application to veterinary diagnostics. Though the course is driven in veterinary aspects, the same implicates to the human and plant pathogen study.

Goal

The ultimate aim is the better management of animal diseases by preparing laboratory technicians, veterinarians and molecular epidemiologists from diagnostic and research laboratories of developing FAO and IAEA member states, to be self-sufficient in the data analysis by interpreting the phylogenetic trees and their relationships.

Target audience

Researchers, Laboratory technicians, veterinarians, epidemiologists from diagnostic and research laboratories of member states of IAEA and FAO. The concepts are explained in generalized way to help all academicians, researchers, students from all countries working in the field of molecular genetics and epidemiology.


Organization/Institute/University:  ViralZone 
Link to the resource: 
 Phylogenetics of animal pathogens: basic principles and applications
Main topics:


Chapter 1: Tree Basics

Chapter 2: Building Phylogenetic Trees

Chapter 3: Interpreting Trees

Chapter 4: Exercises

References



Added by:
Angèle Bénard on Tuesday, 7 April 2020, 5:10 PM
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