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metagenomics
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What you will learn from this course WEEK 1 - From sampling to sequencing WEEK 2 - FROM READS TO RESULTS WEEK 3 - Interpretation of results and potential of metagenomics for surveillance
RESOURCES AND TRAININGS ONLINE
Resources and Trainings Online
* Introduction to metagenomics * 16S Microbial Analysis with mothur (extended) * 16S Microbial Analysis with mothur (short) * Analyses of metagenomics data - The global picture * Antibiotic resistance detection (nanopore, plasmids) * Metatranscriptomics analysis using microbiome RNA-seq data (metatranscriptomics) * Metatranscriptomics analysis using microbiome RNA-seq data (short) (metatranscriptomics)
RESOURCES AND TRAININGS ONLINE
Resources and Trainings Online
* Access data using the MGnify API (Application Programming Interface) * Filter data sets by environmental metadata * Write scripts to programmatically access the data prior to performing analysis
RESOURCES AND TRAININGS ONLINE
Resources and Trainings Online